Mk 2089 Tree Step Lessons
Abstract
In this study, three somatostatin (SRIF) complementary DNAs (cDNAs) were characterized from goldfish brain. The cDNAs encode three distinct preprosomatostatins (PSS), designated as PSS-I, PSS-II, and PSS-III. The goldfish PSS-I, PSS-II, and PSS-III contain enzymatic cleavage recognition sites, potentially yielding SRIF-14 with sequence identical to mammalian SRIF-14, SRIF-28 with [Glu1, Tyr7, Gly10]SRIF-14 at its C-terminus, and[ Pro2]SRIF-14, respectively. The brain distribution of the three SRIF messenger RNAs (mRNAs) were differential but overlapping in the telencephalon, hypothalamus and optic tectum-thalamus regions. Seasonal variations in the levels of the three mRNAs were observed, with differential patterns between the three mRNAs and differences between the sexes. However, only the seasonal alteration in the levels of the mRNA encoding PSS-I showed close association with the seasonal variation in brain contents of immunoreactive SRIF-14 and inversely correlated with the seasonal variation in serum GH levels described in the previous studies, suggesting that SRIF-14 is involved in the control of the seasonal variation in serum GH levels. The putative SRIF-14 variant, [Pro2]SRIF-14, inhibited basal GH secretion from in vitro perifused goldfish pituitary fragments, with similar potency to SRIF-14; [Pro2]SRIF-14 also inhibited stimulated GH release from the pituitary fragments, supporting that [Pro2]SRIF-14 is a biologically active form of SRIF in goldfish.
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SOMATOSTATIN (SRIF or SS) is a polypeptide that was originally isolated from mammalian hypothalamus and characterized as a physiological inhibitor of GH secretion (1). In mammals, SRIF is now known to be a multifunctional peptide widely distributed throughout the central nervous system and peripheral tissues (2, 3). Mammalian SRIF exists as two predominant biologically active forms, SRIF-14 and its NH2-terminal extension of 14 amino acids, SRIF-28. Both SRIF-14 and SRIF-28 are encoded by a common gene and processed from a single precursor (2–4).
SRIF is also a phylogenetically ancient and multigene family of peptides in vertebrates. SRIF-14 has been identified, with the same amino acid sequence, in representative species of all classes of vertebrate (5, 6). In addition, four molecular variants of SRIF-14,[ Ser12]SRIF-14, [Ser5]SRIF-14,[ Pro2, Met13]SRIF-14 and[ Pro2]SRIF-14, have been isolated in nonmammalian vertebrates (7–10). To date, cDNAs for preprosomatostatin-I (PSS-I), which contains SRIF-14 at its C-terminus, have been cloned in several mammalian species (11–14), chicken (15), frog (16), and two teleost species (17–19). The gene for PSS-I has also been characterized in mouse, rat, and human (20–22).
In addition to having PSS-I, teleost fish possess a second SRIF precursor, PSS-II, a molecule that is thought to be processed to a large form of SRIF (SRIF-28 or SRIF-25) with [Tyr7, Gly10]SRIF-14 sequence at its C-terminus. The cDNA sequence for PSS-II has been identified in anglerfish (18) and rainbow trout (23), providing evidence that somatostatins arose from a multigene family. Amino acid sequences for processing products of PSS-II obtained directly from isolates of islet extracts are also known for several teleost species (24–27). Recently, a second SRIF messenger RNA (mRNA) encoding a SRIF-14 variant, [Pro2, Met13]SRIF-14, was identified in frog brain (9). In addition, a SRIF-related gene termed as cortistatin (CST) has been described in human, rat and mouse, which gives rise to a precursor that contains a tetradecapeptide at its C-terminus with an 11 amino acid homology with SRIF-14 (28–30). This suggests the existence of a multigene family for SRIF in tetrapods.
In teleosts, most of the physiological studies of SRIF have been focused on the regulation of pancreatic hormone and metabolism in salmonids (31, 32) and the regulation of GH secretion and growth in goldfish (33). In goldfish, immunoreactive SRIF-14 has been observed in the brain, with fiber tracts that terminate at the proximal pars distalis of pituitary (34, 35). SRIF-14 is a potent inhibitor of basal and stimulated GH release in goldfish (33). In addition, the concentrations of immunoreactive SRIF-14 in various brain regions vary on a seasonal basis inverse to the seasonal variation in serum GH levels (36). The inhibitory actions of SRIF-14 on GH secretion in vitro or in vivo have also been reported in tilapia, rainbow trout, and several other teleost species (33).
In the present study, three distinct SRIF cDNAs were cloned from goldfish brain RNA or cDNA library. The differential brain distribution and seasonal variation of the three SRIF mRNAs were also examined. In addition, the actions of a cDNA-deduced SRIF-14 variant on pituitary GH secretion were investigated using an in vitro perifusion system.
Materials and Methods
Animals
Goldfish (Carasius auratus) of the common or comet variety with body weight ranging from 30–40 g were purchased from Grassyfork Fisheries (Martinsville, IN) and maintained in 300-liter flow-through aquaria at 17 C under a simulated natural photoperiod of Edmonton, Alberta, Canada. The fish were fed with commercially prepared Unifeed Nu-Way trout ration (United Feeds, Calgary, Canada). Sexually regressed fish (mixed sexes) were used for extraction of RNA and DNA for molecular cloning and tissue distribution studies. For seasonal studies, tissue samples were collected in April [sexually mature fish, with gonadosomatic index (GSI) of 6.5% ± 0.68 for female and 3.5% ± 0.31 for male], July (sexually regressed fish, with GSI of 0.11% ± 0.07 for female and 0.21% ± 0.06 for male) and December (sexually recrudescent fish, with GSI of 4.06% ± 0.91 for female and 2.6% ± 0.33 for male) of the same year. Goldfish were anesthetized with 0.05% tricaine methanesulfonate (Syndel, Vancouver, BC) before tissue collection.
Reagents and test substances
SRIF-14 (Ala-Gly-Cys-Lys-Asn-Phe-Phe-Trp-Lys-Thr-Phe-Thr-Ser-Cys) was obtained from Sigma Chemical Co. (St. Louis, MO).[ Pro2]SRIF-14 was a gift from Professor H. Kawauchi (Kitasato University, Sanriku, Japan). SRIF peptides were dissolved in HBSS immediately before use. sGnRH ([Trp7, Leu8]GnRH) was purchased from Peninsula Laboratories, Inc. (Belmont, CA). sGnRH was dissolved in 0.1 m acetic acid. Subsequent dilution of all peptides to appropriate concentrations with culture medium was performed immediately before drug treatment. Dopamine (DA) D1 receptor agonist, SKF 38393 (1-phenyl-2,3,4,5-tetrahydro-(1H)-3-benzazepine-7,8-diol hydrochloride), was purchased from Research Biochemicals International, Inc. (Wayland, MA). SKF 38393 was first dissolved in dimethyl sulfoxide (DMSO), and then diluted to appropriate concentration with culture medium. Final levels of DMSO was less than 0.1%, and did not alter basal GH release from goldfish pituitary fragments (unpublished results). Trizol Reagent, Taq DNA polymerase and SuperScript Preamplification System were purchased from Life Technologies (Gaithersburg, MD). T7QuickPrime Kit was obtained from Pharmacia Biotech (Baie d’Urfe, Québec, Canada). Nybond Nylon membranes and discs, ECL direct nucleic acid labeling and detection system,[α -32P]deoxy-CTP (dCTP) were obtained from Amersham Life Science (Buckinghamshire, UK). JM109 competent cells and pGEM-T vector system were purchased from Promega Corp. (Madison, WI). Other reagents were of the highest degree of purity available from commercial sources.
Preparation of total RNA and genomic DNA
Total RNA was extracted from goldfish forebrain (telencephalon, including optic nerve and preoptic region, and hypothalamus) using Trizol Reagent, based on the acid guanidinium thiocyanate-phenol-chloroform extraction method (37). The integrity of the RNA was verified by ethidium bromide staining of 28s and 18s ribosomal bands on a denaturing agarose gel. Genomic DNA was isolated from liver tissue of single fish using Trizol Reagent according to the manufacturer’s instruction.
Cloning of three goldfish SRIF cDNAs
For cloning of goldfish PSS-I cDNA, RT-PCR was used to prepare a DNA probe for screening the goldfish brain cDNA library. cDNA was synthesized from 4 μg of total RNA from goldfish forebrain using the SuperScript Preamplification System. For PCR, forward primer SS1-F1 (5′CGGATCCAGTGCGCCCTGGC3′) and reverse primer SS1-R1 (5′GTGAAAGTTTTCCAGAAGAA3′) were designed on the basis of the coding region of the catfish PSS-I cDNA sequence (19). Thirty cycles of PCR amplification were performed with denaturation for 1 min at 94 C, annealing for 1 min at 50 C, extension for 1.5 min at 73 C, and final extension for 10 min at 73 C after the last cycle. Amplification products were separated by agarose gel, and the band of desired size was excised and purified using a Geneclean II kit (Bio 101, La Jolla, CA). The purified DNA fragment (323 bp) was subcloned into pGEM-T vector. The nucleotide sequence analysis indicated that the cloned PCR product (323 bp) contained a partial coding region for a precursor with a partial SRIF-14 sequence at its C-terminus. This DNA fragment was then used as a probe to screen the cDNA library.
A goldfish brain cDNA library (kindly provided by Dr. H. R. Habibi, University of Calgary, Calgary, Alberta, Canada) was constructed using the ZAP-cDNA synthesis kit, including Gigapack II Gold packaging extract (Stratagene, La Jolla, CA). The library was amplified once to a titer of 6 × 109 pfu/ml before being transferred to Nybond-N+ discs at a density of 2 × 104 plaques/filter according to the manufacturer’s protocol. The filters were probed with the 323 bp DNA probe prepared by PCR as described above. The probe labeling, hybridization, and signal detection were performed using ECL direct nucleic acid labeling and detection systems based on enhanced chemiluminescence (38). A total of 2.5 × 105 clones were screened, out of which six positives were picked and subjected to secondary screening. Three positive clones were obtained from the secondary screening and subjected to in vivo excision according to the instruction of the ZAP-cDNA synthesis kit. The three clones with cDNA inserts of desired size (approximately 750 bp) were sequenced on an PE Applied Biosystems automated sequencer (373A) according to the manufacturer’s protocol. Sequencing was carried out on both strands using T7 and T3 sequencing primers that flank the insert cDNA.
For cloning of goldfish PSS-II cDNA, RT and rapid amplification of cDNA ends (RACE, 39) were applied. To isolate the 3′ end of cDNA for PSS-II, two degenerate primers, DP1 (5′GCIGGITG(CT)AAGAACTTCTA3′] and DP2 (5′AAGAACTTCTA(CT)TGGAAGGG3′], were designed on the basis of the[ Tyr7, Gly10]SRIF-14 amino acid sequence of anglerfish and rainbow trout PSS-II (18, 23). RT and RACE were carried out as described previously (40, 41). Briefly, total RNA was reverse transcribed to cDNA with dT-adapter primer [dT-AP, 5′GGCCACGCGTCGACTAGTAC(T)173′] using SuperScript II reverse transcriptase. Two rounds of PCR amplifications were then performed to amplify the 3′ end of cDNA with adapter primer (AP, 5′GGCCACGCGTCGACTAGTAC3′) and DP1, and AP and internal DP2, respectively. After determining the nucleotide sequence of the cDNA 3′ end, new cDNA was synthesized by RT of total RNA with gene specific primer 1 (GSP1, 5′TTAACTTACATTGAGTCAGTTGA3′). After 3′-end tailing of the cDNA with poly(A) using TdT (Life Technologies), the second strand cDNA was synthesized using dT-AP. Two rounds of PCR amplifications were then carried out to amplify the 5′ end of cDNA with AP and GSP1, and AP and internal gene specific primer 2 (GSP2, 5′CAAGCGAGGGCCTCAGCAGG3′), respectively. PCR products were fractionated and the desired bands were purified and subcloned using pGEM-T vector system. DNA sequence analyses were carried out as described above.
To confirm the PSS-II cDNA sequence obtained from RT and RACE, PCR of goldfish genomic DNA was carried out to obtain a partial gene sequence that contained the full coding region for PSS-II. PCR amplification was performed using 100 ng of genomic DNA as template and primers SS2-F1 (5′CGAATCACAGCTACAAAGAGTC3′) and SS2-R1 (5′CAAGCGAGGGCCTCAGCAGG3′) designed from the 5′ and 3′ ends of the isolated PSS-II cDNA sequence. PCR products were purified and subcloned into the pGEM-T vector. DNA sequence analyses were carried out as described above using T7 and M13 reverse sequencing primers and gene specific primers.
For cloning of the third SRIF cDNA, the goldfish brain cDNA library was screened using partial goldfish PSS-II cDNA as probe. A 426-bp DNA probe was prepared by PCR with primer set, SS2-F1, and SS2-R1 specific for the cloned cDNA sequence for PSS-II, and PSS-II cDNA as template. The probe was then used to screen the cDNA library as described above. The probe labeling, hybridization, and signal detection were performed using ECL direct nucleic acid labeling and detection systems. A total of 2 × 105 clones were screened, out of which three positives were picked and subjected to the secondary screening. Two positive clones were obtained from the secondary screening and subjected to in vivo excision and sequence analysis as described above.
Brain distribution of three goldfish somotostatin mRNAs
Tissues of five discrete goldfish brain areas, olfactory bulbs and tracts, telencephalon (including optic nerve and preoptic region), hypothalamus, optic tectum-thalamus, and posterior brain (including cerebellum, medulla and spinal cord), and pituitary were freshly excised and homogenized for extraction of total RNA using Trizol Reagent as described above. About 10 μg of total RNA from individual tissues were fractionated by electrophoresis in a denaturing agarose gel (1.5%) with formaldehyde and blotted onto Nybond nylon membrane by capillary transfer. The cDNAs for goldfish PSS-I, PSS-II, and PSS-III were labeled with [α-32P]dCTP using T7QuickPrime Kit. Hybridization was performed using methods described by Church and Gilbert (42). In brief, the membranes were prehybridized in hybridization solution (0.5 m NaHPO4, 7% SDS, 1 mm EDTA, and 1% BSA) for at least 1 h. The hybridization solution was then changed, and the labeled probe was added. After hybridization overnight at 65 C, the membranes were washed three times with washing solution (0.04 m NaHPO4, 1 mm EDTA, and 1% SDS) and exposed to a phosphoimaging screen for 72 h. To serve as an internal control, the membrane was stripped and reprobed with a[α -32P]dCTP-labeled partial cDNA for goldfishα -tubulin (kind gift from Dr. H. R. Habibi, University of Calgary, Calgary, Alberta, Canada).
The brain distribution of the three goldfish somatostatin mRNAs was further confirmed by RT-PCR followed by Southern blot analysis. First strand cDNA was prepared from total RNA using the SuperScript Preamplification System and used as templates for PCR using specific primers for the three goldfish SRIF mRNAs. The primer sets are: SS1-F2 (5′GCGTATCCAGTGCGCACTGGC3′) and SS1-R2 (5′GTGAAAGTTTTCCAGAAGAA3′) for PSS-I mRNA, SS2-F1 (5′CGAATCACAGCTACAAAGAGTC3′) and SS2-R1 (5′CAAGCGAGGGCCTGAGCAGG3′) for PSS-II, and SS3-F1 (5′GGAGCTACAAGACTTCAAC3′) and SS3-R1 (5′CTGTGTCAGAGTAAGTCCACG3′) for PSS-III. PCR condition was denaturation 1 min at 94 C, annealing 1 min at 51−55 C and extension 1 min at 73 C for a total of 30 cycles, and a final extension of 10 min at 73 C. For internal control, RT-PCR was performed at the same time using a primer set (Actin-F: CTACTGGTATTGTGATGGACTCCG; Actin-R: TCCAGACAGAGTATTTGCGCTCAG) for goldfish β-actin. Twenty microliters of each PCR reaction were fractionated on 1.5% agarose gel and transferred onto a Nybond nylon membrane by capillary transfer. The membranes were then hybridized with cDNA probes for one of the three goldfish SRIF mRNAs, using ECL direct nucleic acid labeling and detection systems.
Seasonal variation of three goldfish somatostatin mRNAs
Tissue samples of forebrain regions of 20 goldfish were collected on April 3, July 31, and December 21 of the same year, respectively, and stored at −80 C until total RNA was extracted. The mRNA levels for each PSS form in the total RNA samples were analyzed using Northern blot as described in the previous section. The hybridization signals were scanned using phosphorimaging (Molecular Dynamics, Inc., Sunnyvale, CA) and quantitated by ImageQuant software (Molecular Dynamics, Inc.). The mRNA levels for each PSS form were expressed as a ratio of PSS mRNA toα -tubulin mRNA. These ratios were then normalized as a percentage of mRNA levels from male fish collected in April.
Column perifusion of goldfish pituitary fragments
To examine the actions of the deduced SRIF-14 variant,[ Pro2]SRIF, on pituitary GH secretion, an in vitro column perifusion system for goldfish pituitary fragments was used (43). In brief, goldfish (sexually recrudescent) pituitary fragments (0.2 mm3) from 30 pituitaries were divided over 8 columns. The pituitary fragments were perifused overnight (15–18 h) with M199 (Life Technologies) containing 56 U/ml Nystatin (Sigma Chemical Co.), at a flow rate of 5 ml/h. Two hours before the experiment, the perifusion medium was switched to HBSS containing 25 mm HEPES and 0.1% BSA (Sigma Chemical Co.), and the flow rate increased to 15 ml/h. After this period of continuous perifusion, GH release from the pituitary fragments remained relatively stable in the absence of stimulation. Test substances were then applied from a drug reservior to the perifusion column through a three-way stopcock. Perifusate samples were collected in 5-min fractions and stored frozen at −25 C. GH contents in these samples were assayed using a RIA previously validated for goldfish GH (43).
For the dose-response study, goldfish pituitary fragments were administered with 2 min pulses of increasing doses of[ Pro2]SRIF-14 or SRIF-14 from 0.01 nm to 100 nm at intervals of 30 min. To examine the actions of[ Pro2]SRIF-14 on stimulated GH release from pituitary fragments, the pituitary fragments were first exposed to a 2-min pulse of 1 μm SKF 38393 or a 5-min pulse of 100 nm sGnRH. Sixty min after the pulse of sGnRH or SKF 38393, the fragments were exposed to 100 nm [Pro2]SRIF-14 or medium (control) for 60 min. During the exposure to SRIF or medium, the fragments were also exposed to the second pulse of 100 nm sGnRH (5 min) or 1 μm SKF 38393 (2 min). A third pulse of 100 nm sGnRH (5 min) or 1 μm SKF 38393 (2 min) was administered to the fragments 60 min after exposure to SRIF or medium. The interval between each of the three pulses of 100 nm sGnRH (5 min) or 1 μm SKF 38393 (2 min) was 90 min.
Data transformation and statistics
GH data from each column were expressed as a percentage of the mean GH contents of the first six fractions (30 min) collected at the beginning of perifusion before any drug treatment commenced (referred to as % pretreatment) (43, 44). This data transformation allows pooling of GH data from separate columns of the same experiment. GH responses were quantified by calculating the accumulated net change in GH release during the 30-min period (6 fractions) after a pulse of drug treatment (i.e. a net change in the area under the curve). Dose-response curves for [Pro2]SRIF-14 and SRIF-14 were analyzed with the ALLFIT computer program to obtain the respective ED50 values (45). Data for GH release quantitated by RIA and SRIF mRNA levels quantitated by Northern blot analysis were subjected to statistical analyses using ANOVA followed by Fisher’s least significant difference (LSD) test. Differences were considered significant at P < 0.05.
Results
Three goldfish SRIF cDNAs
Screening of a goldfish brain cDNA library with a probe for the coding region of partial PSS-I cDNA obtained six positive clones. After secondary screening, three clones were characterized by nucleotide sequence analysis. Sequence analysis confirmed their identity as PSS-I cDNA clones because the deduced protein sequence contains SRIF-14 at its C-terminus. All three clones contained the identical nucleotide sequence of PSS-I cDNA, only differing in the length of poly(A) tails at their 3′-end. The 749-nucleotide sequence of goldfish PSS-I cDNA is shown in Fig. 1A (GenBank accession number U40754), along with the deduced amino acid sequence of the PSS-I. The cDNA comprises 79 bases of 5′-untranslated region, 345 bases of open reading frame, and a long 325 base 3′-untranslated region, which contains a polyadenylation signal (AATAAA) and a poly(A) tail. The nucleotide sequence of the open reading frame predicts a goldfish PSS-I of 114 amino acid residues. The PSS-I consists of a putative signal peptide sequence of 24 amino acids from position +1 to 24. The signal peptide has features common to other signal peptides, notably a region of hydrophobic residues preceded by a positively charged residue (Arg at +5) near the N terminus (46). The precursor also contains a number of putative enzyme cleavage recognition sites (47). These include an Arg monobasic site at position +88, potentially yielding a 26-amino acid large form of SRIF (SRIF-26), and an Arg-Lys dibasic site at position +99 to 100, potentially yielding SRIF-14 with sequence identical to mammalian SRIF-14 (1).
The cDNA and deduced amino acid sequences of the three goldfish preprosomatostatins (PSS), PSS-I (A), PSS-II (B), and PSS-III (C). The DNA sequences of the 5′- and 3′-untranslated region are shown as lower case letters, while coding regions are shown as upper case letters. The putative signal peptide sequences are shown as bold upper case letters. Potential monobasic and dibasic enzymatic cleavage recognition sites are indicated in boxes. The amino acid sequences for somatostatin-14 (SRIF-14) or its potential variants are underlined at the C-terminus of each precursor. The polyadenylation signals (AATAAA or ATTAAA) in the 3′-untranslated regions are shown as upper case letters.
The cDNA and deduced amino acid sequences of the three goldfish preprosomatostatins (PSS), PSS-I (A), PSS-II (B), and PSS-III (C). The DNA sequences of the 5′- and 3′-untranslated region are shown as lower case letters, while coding regions are shown as upper case letters. The putative signal peptide sequences are shown as bold upper case letters. Potential monobasic and dibasic enzymatic cleavage recognition sites are indicated in boxes. The amino acid sequences for somatostatin-14 (SRIF-14) or its potential variants are underlined at the C-terminus of each precursor. The polyadenylation signals (AATAAA or ATTAAA) in the 3′-untranslated regions are shown as upper case letters.
RT and RACE were performed to clone goldfish PSS-II cDNA. 3′-RACE produced a distinct band of approximately 200 bp size. Sequence analysis of this product indicates that this partial cDNA contained the 3′-untranslated region and coding region for the C-terminal portion of the [Tyr7, Gly10]SRIF-14 sequence. Analysis of the 5′-RACE products revealed a distinct band of about 450 bp. Subcloning and sequence analysis showed that this 5′-RACE product contained nucleotide sequences for the 5′-untranslated region and an open reading frame for the second goldfish SRIF precursor (PSS-II), which contains [Glu1, Tyr7, Gly10]SRIF-14 at its C-terminus. The nucleotide sequences of the overlapping portions were identical between the partial cDNAs obtained by 3′-RACE and 5′-RACE. The same PCR amplification and sequence analyses for 3′-RACE and 5′-RACE were repeated to confirm that the sequences did not include any errors caused by misincorporation. Additional confirmation of the complete nucleotide sequence of the goldfish PSS-II cDNA was achieved by performing PCR amplification using specific primers positioned at the most 5′ and 3′ end of the cDNA and sequence analysis of the cDNA. The complete nucleotide sequences and the deduced amino acid sequence of the PSS-II cDNA, size 589 bp, is shown in Fig. 1B (GenBank accession number U60262). The cDNA comprises 57 bp 5′-untranslated region, an open reading frame (363 bp), and a 169 bp 3′-untranslated region, including two polyadenylation signals (AATAAA) and a poly(A) tail. The open reading frame encodes a 120-amino acid precursor, which contains a putative 26-amino acid signal peptide sequence from position +1 to 26. The precursor contains an Arg monobasic site at position +92, potentially yielding a large form of SRIF (SRIF-28) with 28 amino acids, and an Arg-Lys dibasic site at position +105 to +106, potentially yielding [Glu1, Tyr7, Gly10]SRIF-14. The [Glu1, Tyr7, Gly10]SRIF-14 is likely a variant of[ Tyr7, Gly10]SRIF-14, which was identified at the C-terminus of PSS-II in anglerfish (18) and rainbow trout (23). To confirm the PSS-II cDNA sequence derived from RT and RACE, PCR of genomic DNA was performed to obtain a partial gene sequence for PSS-II. Sequence analysis of the PCR product confirmed the cDNA sequence. This 1269-bp partial gene sequence contains an internal intron of 841 bp and two partial exons for a reading frame of 363 bp encoding the full-length of PSS-II (Data not shown, GenBank accession number AF025686).
Screening of the goldfish brain cDNA library using partial PSS-II cDNA as probe identified two positive clones. After secondary screening, two positive clones were characterized by nucleotide sequence analysis. The identity of the sequence indicates a novel cDNA, as the deduced peptide sequence contains a SRIF-14 variant with a proline substitution at position 2 of SRIF-14. The 694 bp of goldfish PSS-III cDNA (GenBank accession number U72656) is shown in Fig. 1C, along with the deduced amino acid sequence of the precursor (PSS-III). The cDNA is comprised of a 104 bp 5′-untranslated region, 336 bp of open reading frame, and a 254 bp 3′-untranslated region, which contains a modified polyadenylation signal (ATTAAA) and a poly (A) tail. The deduced 111-amino acid precursor consists of a putative signal peptide sequence of 19 amino acids from position +1 to 19. The precursor contains an Arg-Lys dibasic site at position +96 and +97, potentially processing into [Pro2]SRIF-14. In addition, the precursor contains two Arg monobasic sites at +87 and +82, potentially generating a 24-amino acid peptide and a 29-amino acid peptide, respectively.
The nucleotide sequence similarity of the precursor coding regions of the three goldfish SRIF cDNAs are 53%, 22%, and 15% between PSS-I and PSS-II cDNA, PSS-I and PSS-III cDNA, and PSS-II, and PSS-III cDNA, respectively. The amino acid sequence similarity between three goldfish PSSs are 38%, 32%, and 18% between PSS-I and PSS-II, PSS-I and PSS-III, and PSS-II and PSS-III, respectively. Table 1 summarizes the percentage amino acid sequence similarity of the known PSS between goldfish and other veterbrate species. The multiple sequence alignment was performed using Clustal W program at the online service website of European Bioinformatics Institute.
Percentage amino acid sequence similarity of the known preprosomatostatins (PSS) between goldfish and other vertebrate species